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ABSTRACT Global transposon mutagenesis is a valuable tool for identifying genes required for cell viability. Here we present a global analysis of the orientation of viable Tn 5 -Puro r (Tn 5 -puromycin resistance) insertions into the near-minimal bacterial genome of JCVI-syn2.0. Sixteen of the 478 protein-coding genes show a noticeable asymmetry in the orientation of disrupting insertions of Tn 5 -Puro r . Ten of these are located in operons, upstream of essential or quasi-essential genes. Inserts transcribed in the same direction as the downstream gene are favored, permitting read-through transcription of the essential or quasi-essential gene. Some of these genes were classified as quasi-essential solely because of polar effects on the expression of downstream genes. Three genes showing asymmetry in Tn 5 -Puro r insertion orientation prefer the orientation that avoids collisions between read-through transcription of Tn 5 -Puro r and transcription of an adjacent gene. One gene (JCVISYN2_0132 [abbreviated here as “_0132”]) shows a strong preference for Tn 5 -Puro r insertions transcribed upstream, away from the downstream nonessential gene _0133. This suggested that expression of _0133 due to read-through from Tn 5 -Puro r is lethal when _0132 function is disrupted by transposon insertion. This led to the identification of genes _0133 and _0132 as a toxin-antitoxin pair. The three remaining genes show read-through transcription of Tn 5 -Puro r directed downstream and away from sizable upstream intergenic regions (199 bp to 363 bp), for unknown reasons. In summary, polar effects of transposon insertion can, in a few cases, affect the classification of genes as essential, quasi-essential, or nonessential and sometimes can give clues to gene function. IMPORTANCE In studies of the minimal genetic requirements for life, we used global transposon mutagenesis to identify genes needed for a minimal bacterial genome. Transposon insertion can disrupt the function of a gene but can also have polar effects on the expression of adjacent genes. In the Tn 5 -Puro r construct used in our studies, read-through transcription from Tn 5 -Puro r can drive expression of downstream genes. This results in a preference for Tn 5 -Puro r insertions transcribed toward a downstream essential or quasi-essential gene within the same operon. Such polar effects can have an impact on the classification of genes as essential, quasi-essential, or nonessential, but this has been observed in only a few cases. Also, polar effects of Tn 5 -Puro r insertion can sometimes give clues to gene function. 

A search for pair production of squarks or gluinos decaying via sleptons or weak bosons is reported. The search targets a final state with exactly two leptons with same-sign electric charge or at least three leptons without any charge requirement. The analysed data set corresponds to an integrated luminosity of 139 fb⁻¹of proton-proton collisions collected at a centre-of-mass energy of 13 TeV with the ATLAS detector at the LHC. Multiple signal regions are defined, targeting several SUSY simplified models yielding the desired final states. A single control region is used to constrain the normalisation of theWZ+ jets background. No significant excess of events over the Standard Model expectation is observed. The results are interpreted in the context of several supersymmetric models featuring R-parity conservation or R-parity violation, yielding exclusion limits surpassing those from previous searches. In models considering gluino (squark) pair production, gluino (squark) masses up to 2.2 (1.7) TeV are excluded at 95% confidence level.

 

A search for supersymmetry targeting the direct production of winos and higgsinos is conducted in final states with either two leptons (eorμ) with the same electric charge, or three leptons. The analysis uses 139 fb⁻¹ofppcollision data at$$ \sqrt{s} $$$\sqrt{s}$= 13 TeV collected with the ATLAS detector during Run 2 of the Large Hadron Collider. No significant excess over the Standard Model expectation is observed. Simplified and complete models with and withoutR-parity conservation are considered. In topologies with intermediate states including eitherWhorWZpairs, wino masses up to 525 GeV and 250 GeV are excluded, respectively, for a bino of vanishing mass. Higgsino masses smaller than 440 GeV are excluded in a naturalR-parity-violating model with bilinear terms. Upper limits on the production cross section of generic events beyond the Standard Model as low as 40 ab are obtained in signal regions optimised for these models and also for anR-parity-violating scenario with baryon-number-violating higgsino decays into top quarks and jets. The analysis significantly improves sensitivity to supersymmetric models and other processes beyond the Standard Model that may contribute to the considered final states.

 

Search for a new pseudoscalar a-boson decaying to muons in events with additional top quark pairs. 

A search for dark matter produced in association with a Higgs boson in final states with two hadronically decayingτ-leptons and missing transverse momentum is presented. The analysis uses 139 fb⁻¹of proton-proton collision data at$$ \sqrt{s} $$$\sqrt{s}$= 13 TeV collected by the ATLAS experiment at the Large Hadron Collider between 2015 and 2018. No evidence of physics beyond the Standard Model is found. The results are interpreted in terms of a 2HDM+amodel featuring two scalar Higgs doublets and a pseudoscalar singlet field. Exclusion limits on the parameters of the model in selected benchmark scenarios are derived at 95% confidence level. Model-independent limits are also set on the visible cross-section for processes beyond the Standard Model producing missing transverse momentum in association with a Higgs boson decaying intoτ-leptons.

 

A search for pair-produced vector-like quarks using events with exactly one lepton (eor$$\mu $$$\mu$), at least four jets including at least oneb-tagged jet, and large missing transverse momentum is presented. Data from proton–proton collisions at a centre-of-mass energy of$$\sqrt{s}=$$$\sqrt{s}=$13 $$\text {TeV}$$$\text{TeV}$, recorded by the ATLAS detector at the LHC from 2015 to 2018 and corresponding to an integrated luminosity of 139 fb$$^{-1}$$${}^{-1}$, are analysed. Vector-like partnersTandBof the top and bottom quarks are considered, as is a vector-likeXwith charge$$+5/3$$$+5/3$, assuming their decay into aW,Z, or Higgs boson and a third-generation quark. No significant deviations from the Standard Model expectation are observed. Upper limits on the production cross-section ofTandBquark pairs as a function of their mass are derived for various decay branching ratio scenarios. The strongest lower limits on the masses are 1.59 $$\text {TeV}$$$\text{TeV}$assuming mass-degenerate vector-like quarks and branching ratios corresponding to the weak-isospin doublet model, and 1.47 $$\text {TeV}$$$\text{TeV}$(1.46 $$\text {TeV}$$$\text{TeV}$) for exclusive$$T \rightarrow Zt$$$T\to Zt$($$B/X \rightarrow Wt$$$B/X\to Wt$) decays. In addition, lower limits on theTandBquark masses are derived for all possible branching ratios.

 

This paper describes a search for the single production of an up-type vector-like quark (T) decaying asT→HtorT→Zt. The search utilises a dataset ofppcollisions at$$ \sqrt{s} $$$\sqrt{s}$= 13 TeV collected with the ATLAS detector during the 2015–2018 data-taking period of the Large Hadron Collider, corresponding to an integrated luminosity of 139 fb⁻¹. Data are analysed in final states containing a single lepton with multiple jets andb-jets. The presence of boosted heavy resonances in the event is exploited to discriminate the signal from the Standard Model background. No significant excess above the Standard Model expectation is observed, and 95% CL upper limits are set on the production cross section ofTquarks in different decay channels. The results are interpreted in several benchmark scenarios to set limits on the mass and universal coupling strength (κ) of the vector-like quark. For singletTquarks,κvalues above 0.53 are excluded for all masses below 2.3 TeV. At a mass of 1.6 TeV,κvalues as low as 0.35 are excluded. ForTquarks in the doublet scenario, where the production cross section is much lower,κvalues above 0.72 are excluded for all masses below 1.7 TeV, and this exclusion is extended toκabove 0.55 for low masses around 1.0 TeV.